SubtiBank SubtiBank
yydK [2018-09-25 16:49:47]
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yydK [2018-09-25 16:49:47]

similar to transcriptional regulator (GntR family)
locus
BSU40130
pI
5.19
mw
27.13 kDa
protein length
236 aa Sequence Blast
gene length
708 bp Sequence Blast
function
unknown
product
transcriptional regulator (GntR family)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    4,123,193 → 4,123,903

    The protein

    Protein family

  • [SW|GntR family] of transcription factors

    • Structure

  • [PDB|3BWG]

    • Expression and Regulation

    Operons

    genes
    [gene|59EBB1812BA939110BC00ACE30057AB987E61B30|yydK]-[gene|D29C8EF4F415C68A90DF693AB1AC12537CE87298|yyzN]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B806 (yydK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1805 NBRP B. subtilis, Japan]
  • BKE40130 (Δ[gene|59EBB1812BA939110BC00ACE30057AB987E61B30|yydK]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGCATTCCTCATTTAT, downstream forward: _UP4_TAGGGCTCTTCACTACGGTA
  • BKK40130 (Δ[gene|59EBB1812BA939110BC00ACE30057AB987E61B30|yydK]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40130 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGCATTCCTCATTTAT, downstream forward: _UP4_TAGGGCTCTTCACTACGGTA

    • References

  • 23504016